We are viewed as "rotten" in the sense that we are corruptible. When we die, we are subject to decay. Morally we are born corrupt. This was by man's choice, not God's. The only way to be restored from the fall of the first Adam is to choose to be a child of the second Adam instead. We then have fellowship once more with God and can be renewed.

Scripture says,

Rom 5:6 For when we were yet without strength, in due time Christ died for the ungodly.
Rom 5:7 For scarcely for a righteous man will one die: yet peradventure for a good man some would even dare to die.
Rom 5:8 But God commendeth his love toward us, in that, while we were yet sinners, Christ died for us.
Rom 5:9 Much more then, being now justified by his blood, we shall be saved from wrath through him.
Rom 5:10 For if, when we were enemies, we were reconciled to God by the death of his Son, much more, being reconciled, we shall be saved by his life.
Rom 5:11 And not only so, but we also joy in God through our Lord Jesus Christ, by whom we have now received the atonement.
Rom 5:12 Wherefore, as by one man sin entered into the world, and death by sin; and so death passed upon all men, for that all have sinned:
Rom 5:13 (For until the law sin was in the world: but sin is not imputed when there is no law.
Rom 5:14 Nevertheless death reigned from Adam to Moses, even over them that had not sinned after the similitude of Adam's transgression, who is the figure of him that was to come.
Rom 5:15 But not as the offence, so also is the free gift. For if through the offence of one many be dead, much more the grace of God, and the gift by grace, which is by one man, Jesus Christ, hath abounded unto many.
Rom 5:16 And not as it was by one that sinned, so is the gift: for the judgment was by one to condemnation, but the free gift is of many offences unto justification.
Rom 5:17 For if by one man's offence death reigned by one; much more they which receive abundance of grace and of the gift of righteousness shall reign in life by one, Jesus Christ.)
Rom 5:18 Therefore as by the offence of one judgment came upon all men to condemnation; even so by the righteousness of one the free gift came upon all men unto justification of life.
Rom 5:19 For as by one man's disobedience many were made sinners, so by the obedience of one shall many be made righteous.

1Co 15:32 If after the manner of men I have fought with beasts at Ephesus, what advantageth it me, if the dead rise not? let us eat and drink; for to morrow we die.
1Co 15:33 Be not deceived: evil communications corrupt good manners.
1Co 15:34 Awake to righteousness, and sin not; for some have not the knowledge of God: I speak this to your shame.
1Co 15:35 But some man will say, How are the dead raised up? and with what body do they come?
1Co 15:36 Thou fool, that which thou sowest is not quickened, except it die:
1Co 15:37 And that which thou sowest, thou sowest not that body that shall be, but bare grain, it may chance of wheat, or of some other grain:
1Co 15:38 But God giveth it a body as it hath pleased him, and to every seed his own body.
1Co 15:39 All flesh is not the same flesh: but there is one kind of flesh of men, another flesh of beasts, another of fishes, and another of birds.
1Co 15:40 There are also celestial bodies, and bodies terrestrial: but the glory of the celestial is one, and the glory of the terrestrial is another.
1Co 15:41 There is one glory of the sun, and another glory of the moon, and another glory of the stars: for one star differeth from another star in glory.
1Co 15:42 So also is the resurrection of the dead. It is sown in corruption; it is raised in incorruption:
1Co 15:43 It is sown in dishonour; it is raised in glory: it is sown in weakness; it is raised in power:
1Co 15:44 It is sown a natural body; it is raised a spiritual body. There is a natural body, and there is a spiritual body.
1Co 15:45 And so it is written, The first man Adam was made a living soul; the last Adam was made a quickening spirit.
1Co 15:46 Howbeit that was not first which is spiritual, but that which is natural; and afterward that which is spiritual.
1Co 15:47 The first man is of the earth, earthy: the second man is the Lord from heaven.
1Co 15:48 As is the earthy, such are they also that are earthy: and as is the heavenly, such are they also that are heavenly.
1Co 15:49 And as we have borne the image of the earthy, we shall also bear the image of the heavenly.
1Co 15:50 Now this I say, brethren, that flesh and blood cannot inherit the kingdom of God; neither doth corruption inherit incorruption.
1Co 15:51 Behold, I shew you a mystery; We shall not all sleep, but we shall all be changed,
1Co 15:52 In a moment, in the twinkling of an eye, at the last trump: for the trumpet shall sound, and the dead shall be raised incorruptible, and we shall be changed.
1Co 15:53 For this corruptible must put on incorruption, and this mortal must put on immortality.
1Co 15:54 So when this corruptible shall have put on incorruption, and this mortal shall have put on immortality, then shall be brought to pass the saying that is written, Death is swallowed up in victory.
1Co 15:55 O death, where is thy sting? O grave, where is thy victory?
1Co 15:56 The sting of death is sin; and the strength of sin is the law.
1Co 15:57 But thanks be to God, which giveth us the victory through our Lord Jesus Christ.
1Co 15:58 Therefore, my beloved brethren, be ye stedfast, unmoveable, always abounding in the work of the Lord, forasmuch as ye know that your labour is not in vain in the Lord.

If God loves me then why am i viewed as "rotten" by Him for not taking the Bible in a literal sense?

In short, God loves us, whether we are sinners or not. His offer of salvation to you Agnostic is testimony to His love for you. You are not viewed as 'rotten' because you do not take the Bible literally, you are 'rotten' because without Jesus Christ,you will rot when you die and you will perish in the second death. It is simply a factual statement of our human condition, not the spewings of a malcontent God. "God is not willing that any perish" are you? Are you willing that you should perish because you are angry at God over the harshness of a sin-filled world? There is a devil who is the 'god of this world,' why not kick him in the balls instead?